Genomics

Trinity RNA-Seq

Trinity assembles transcript sequences from Illumina RNA-Seq data. It is a method for de novo reconstruction of transcriptomes from RNA-seq data.

Deploy

Find the Trinity RNA-Seq template in the DSRI Catalog (make sure the Templates checkbox is checked) and instantiate it. The template uses the Trinity RNA-Seq image hosted in the UM IDS GitHub Container Registry.

Persistent storage

Use the /usr/local/src/work folder to store your data. You can find the persistent volumes in the DSRI web UI under Administrator view > Storage > Persistent Volume Claims.

Particularities

Port 8787 is enabled in the container if you need to deploy additional applications.